A Genome-wide comparison of the PPR genes of rice, Arabidopsis and Physcomitrella

Supplementary Material for O'Toole et al. Mol Biol Evol. 25, 1120-1128 (2008).

Downloads

Distance tree in New Hampshire Extended (NHX) format:

Download File

High-resolution phylogenetic tree figures:

Coloured by species
Coloured by introns
Coloured by subclass
Coloured by targeting

Genome Browser

The PPR gene models in this study can be inspected with a Gbrowse based genome browser:

Arabidopsis PPR Genome Browser
Rice PPR Genome Browser
Physcomitrella PPR Genome Browser

Note: The positions of PPR genes on each chromosome are marked in the Overview and Region panels. PPR motifs are coloured using the scheme of Lurin et al. (2004). A "Best Rice PPR Hits" track in the Arabidopsis browser displays the best BLASTP hit among rice PPR proteins for each Arabidopsis protein. Clicking on the best hit takes you to that gene in the Rice PPR Genome Browser. Similarly, there is a "Best Arabidopsis PPR Hits" track in the Rice browser.

Please direct any questions or comments to Nicholas O'Toole (nicko (at) gene.concordia.ca).