Centre Publications for Ian Small

last updated: Thu Feb 2 13:24:14 2012
49. Kindgren P, Kremnev D, Blanco NE, de Dios Barajas López J, Fernández AP, Tellgren-Roth C, Small I, Strand A (2011) The plastid redox insensitive 2 mutant of Arabidopsis is impaired in PEP activity and high light-dependent plastid redox signalling to the nucleus Transgenic Plant Journal (in press). PUBMED online Impact Factor: unknown
48. Colas des Francs-Small C, Kroeger T, Zmudjak M, Ostersetzer-Biran O, Rahimi N, Small I, Barkan A (2011) A PORR domain protein required for rpl2 and ccmFC intron splicing and for the biogenesis of c-type cytochromes in Arabidopsis mitochondria The Plant Journal (in press). PUBMED online Impact Factor: 7.0
47. Qi Y, Armbruster U, Schmitz-Linneweber C, Delannoy E, Falcon de Longevialle A, Rühle T, Small I, Jahns P, Leister D (2011) Arabidopsis CSP41 proteins form multimeric complexes that bind and stabilize distinct plastid transcripts. Journal of Experimental Botany (in press). PUBMED online Impact Factor: 4.0
46. Tanz S, Kilian J, Johnsson C, Apel K, Small I, Harter K, Wanke D, Pogson B, Albrecht V (2011) The SCO2 protein disulphide isomerase is required for thylakoid biogenesis and interacts with LCHB1 chlorophyl a/b binding proteins which affects chlorophyll biosynthesis in Arabidopsis seedlings. The Plant Journal (in press). PUBMED online Impact Factor: 7.0
45. Tanz S, Small ID (2011) In silico methods for the identification of organellar and suborganellar targeting peptides in Arabidopsis chloroplast proteins, and for predicting the topology of membrane proteins. In: Chloroplast Research In Arabidopsis: Methods and Protocols Methods in Molecular Biology 774:243-80. PUBMED online Impact Factor: unknown
44. Hammani K, Colas des Francs-Small C, Takenaka M, Tanz SK, Okuda K, Shikanai T, Brennicke A, Small ID (2011) The pentatricopeptide repeat protein OTP87 is essential for RNA editing of nad7 and atp1 transcripts in Arabidopsis The Journal of Biological Chemistry 286(24):21361-71. PUBMED online Impact Factor: 6.0
43. Fujii S, Small ID (2011) The evolution of RNA editing and pentatricopeptide repeat genes New Phytologist 191(1):37-47. PUBMED online Impact Factor: 5.0
42. Hammani K, Gobert A, Small ID, Giegé P (2011) A PPR protein involved in regulating nuclear genes encoding mitochondrial proteins? Plant Signaling and Behavior 6(5):748-50. PUBMED online Impact Factor: 2.0
41. Delannoy E, Fujii S, Colas des Francs-Small C, Brundrett M, Small ID (2011) Rampant Gene Loss in the Underground Orchid Rhizanthella gardneri Highlights Evolutionary Constraints on Plastid Genomes Molecular Biology and Evolution 28(7):2077-86. PUBMED online Impact Factor: 9.872
40. Hammani K, Gobert A, Hleibieh K, Choulier L, Small ID, Giegé P (2011) An Arabidopsis dual-localized pentatricopeptide repeat protein interacts with nuclear proteins involved in gene expression regulation The Plant Cell 23(2):730-40. PUBMED online Impact Factor: 11.0
39. Chateigner-Boutin A-L, Colas des Francs-Small C, Delannoy E, Kahlau S, Tanz SK, Falcon de Longevialle AF, Fujii S, Small ID (2011) OTP70 is a pentatricopeptide protein of the E subgroup involved in splicing of the plastid transcript rpoC1 The Plant Journal 65(4):532-42. PUBMED online Impact Factor: 7.0
38. Kumari M, Clarke HJ, Colas des Francs-Small C, Small ID, Khan TN, Siddique KHM (2011) Albinism does not correlate with biparental inheritance of plastid DNA in interspecific hybrids in Cicer species Plant Science 180(4):628-33. PUBMED online Impact Factor: 2.05
37. Fujii S, Bond CS, Small ID (2011) Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution Proceedings of the National Academy of Sciences USA 108(4):1723-8. PUBMED online Impact Factor: 10.0
36. Chateigner-Boutin A-L, Small ID (2011) Organellar RNA editing WIREs RNA 2(4):493-506. PUBMED online Impact Factor: unknown
35. Albrecht V, Simková K, Carrie C, Delannoy E, Giraud E, Whelan J, Small ID, Apel K, Badger MR, Pogson BJ (2010) The Cytoskeleton and the Peroxisomal-Targeted SNOWY COTYLEDON3 Protein Are Required for Chloroplast Development in Arabidopsis The Plant Cell 22(10):3423-38. PUBMED online Impact Factor: 11.0
34. Koprivova A, Colas des Francs-Small C, Calder G, Mugford ST, Tanz SK, Lee BR, Zechmann B, Small ID, Kopriva S (2010) Identification of a pentatricopeptide repeat protein implicated in splicing of intron 1 of mitochondrial nad7 transcripts The Journal of Biological Chemistry 285(42):32192-9. PUBMED online Impact Factor: 6.0
33. Falcon de Longevialle AF, Small ID, Lurin C (2010) Nuclearly Encoded Splicing Factors Implicated in RNA Splicing in Higher Plant Organelles Molecular Plant 3(4):691-705. PUBMED online Impact Factor: unknown
32. Chateigner-Boutin A-L, Small ID (2010) Plant RNA editing RNA Biology 7(2): 213-219. PUBMED online Impact Factor: 5.597
31. Okuda K, Hammani K, Tanz SK, Peng L, Fukao Y, Myouga F, Motohashi R, Shinozaki K, Small ID, Shikanai T (2010) The pentatricopeptide repeat protein OTP82 is required for RNA editing of plastid ndhB and ndhG transcripts The Plant Journal 61(2):339-49. PUBMED online Impact Factor: 7.0
30. Hammani K, Okuda K, Tanz SK, Chateigner-Boutin A-L, Shikanai T, Small ID (2009) A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites Plant Cell The Plant Cell 21(11):3686-9. PUBMED online Impact Factor: 11.0
29. Meyer EH, Tomaz T, Carroll AJ, Estavillo GM, Delannoy E, Tanz SK, Small ID, Pogson BJ, Millar AH (2009) Remodeled respiration in ndusf4 with low phosphorylation efficiency suppresses Arabidopsis germination and growth and alters control of metabolism at night Plant Physiology 151(2):603-19. PUBMED online Impact Factor: 6.0
28. Kühn K, Richter U, Meyer EH, Delannoy E, Falcon de Longevialle AF, O'Toole N, Börner T, Millar AH, Small ID, Whelan J (2009) Phage-Type RNA Polymerase RPOTmp Performs Gene-Specific Transcription in Mitochondria of Arabidopsis thaliana The Plant Cell Sep;21(9):2762-79. PUBMED online Impact Factor: 11.0
27. Kumari M, Clarke HJ, Small ID, Siddique KHM (2009) Albinism in plants: a major bottleneck in wide hybridization, androgenesis and doubled haploid culture Critical Reviews in Plant Sciences 28(6): 393-409. online Impact Factor: 4.8
26. Delannoy E, Le Ret M, Faivre-Nitschke E, Estavillo GM, Bergdoll M, Taylor NL, Pogson BJ, Small ID, Imbault P, Gualberto JM (2009) Arabidopsis tRNA adenosine deaminase (TADA) is responsible for editing the wobble nucleotide of chloroplast tRNAArg(ACG), a modification essential for efficient chloroplast translation The Plant Cell 21(7):2058-71. PUBMED online Impact Factor: 11.0
25. Tillich M, Hardel SL, Kupsch C, Armbruster U, Delannoy E, Gualberto J, Leister D, Small ID, Schmitz-Linneweber C (2009) Chloroplast ribonucleoprotein CP31A is required for editing and stability of specific chloroplast mRNAs Proceedings of the National Academy of Sciences USA 106(14):6002-7. PUBMED online Impact Factor: 10.0
24. Okuda K, Chateigner-Boutin A-L, Nakamura T, Delannoy E, Sugita M, Myougaf F, Motohashi R, Shinozaki K, Small ID, Shikanai T (2009) Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts The Plant Cell 21(1):146-56. PUBMED online Impact Factor: 11.0
23. Zhou W, Cheng Y, Yap A, Chateigner-Boutin A-L, Delannoy E, Hammani K, Small ID, Huang J (2009) The Arabidopsis gene YS1 encoding a DYW protein is required for editing of rpoB transcripts and the rapid development of chloroplasts during early growth The Plant Journal 58(1):82-96. PUBMED online Impact Factor: 7.0
22. Carrie C, Kühn K, Murcha MW, Duncan O, Small ID, O'Toole N, Whelan J (2009) Approaches to Defining Dual-Targeted Proteins in Arabidopsis The Plant Journal 57(6):1128-39. PUBMED online Impact Factor: 7.0
21. Schmitz-Linneweber C, Small ID (2008) Pentatricopeptide repeat proteins: a socket set for organelle gene expression Trends in Plant Science 13(12):663-70. PUBMED online Impact Factor: 10.0
20. Eubel H, Meyer EH, Taylor NL, Bussell JD, O'Toole N, Heazlewood JL, Castleden I, Small ID, Smith SM, Millar AH (2008) Novel proteins, putative membrane transporters and an integrated metabolic network are revealed by quantitative proteomic analysis of Arabidopsis cell culture peroxisomes Plant Physiology 148(4):1809-29. PUBMED online Impact Factor: 6.0
19. Garmier M, Carroll AJ, Delannoy E, Vallet C, Day DA, Small ID, Millar AH (2008) Complex I dysfunction redirects cellular and mitochondrial metabolism in Arabidopsis Plant Physiology 148(3):1324-1341. PUBMED online Impact Factor: 6.0
18. Pogson BJ, Woo NS, Förster B, Small ID (2008) Plastid signalling to the nucleus and beyond. Trends in Plant Science 13(11): 602-609. PUBMED online Impact Factor: 10.0
17. Chateigner-Boutin A-L, Ramos-Vega M, Guevara-García A, Andrés C, de la Luz Gutiérrez-Nava M, Cantero A, Delannoy E, Jiménez LF, Lurin C, Small ID, León P (2008) CLB19, a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts. The Plant Journal 56(4):590-602. PUBMED online Impact Factor: 7.0
16. Falcon de Longevialle AF, Hendrickson L, Taylor NL, Delannoy E, Lurin C, Badger MR, Millar AH, Small ID (2008) The pentatricopeptide repeat gene OTP51 with two LAGLIDADG motifs is required for the cis-splicing of plastid ycf3 intron 2 in Arabidopsis thaliana The Plant Journal 56(1):157-68. PUBMED online Impact Factor: 7.0
15. O'Toole N, Hattori M, Andrés C, Iida K, Lurin C, Schmitz-Linneweber C, Sugita M, Small ID (2008) On the expansion of the pentatricopeptide repeat gene family in plants Molecular Biology and Evolution 25(6):1120-1128. PUBMED online Impact Factor: 9.872
14. Narsai R, Howell KA, Millar AH, O'Toole N, Small ID, Whelan J (2007) Genome-Wide Analysis of mRNA Decay Rates and their Determinants in Arabidopsis thaliana The Plant Cell 19, 3418-3436. PUBMED online Impact Factor: 11.0
13. Delannoy E, Stanley WA, Bond CS, Small ID (2007) Pentatricopeptide repeat (PPR) proteins as sequence-specificity factors in post-transcriptional processes in organelles Biochemical Society Transactions 35, 1643-1647. PUBMED online Impact Factor: 3.989
12. Falcon de Longevialle AF, Meyer EH, Andrés C, Taylor NL, Lurin C, Millar AH, Small ID (2007) The Pentatricopeptide Repeat Gene OTP43 is Required for trans-Splicing of the Mitochondrial nad1 Intron 1 in Arabidopsis thaliana The Plant Cell 19(10): 3256-3265. PUBMED online Impact Factor: 11.0
11. Saloné V, Rãdinger M, Polsakiewicz M, Hoffmann B, Groth-Malonek M, Szurek B, Small ID, Knoop V, Lurin C (2007) A hypothesis on the identification of the editing enzyme in plant organelles FEBS Letters 581(22), 4132-8. PUBMED online Impact Factor: 3.0
10. Chateigner-Boutin A-L, Small ID (2007) A rapid high-throughput method for the detection and quantification of RNA editing based on high-resolution melting of amplicons Nucleic Acids Research 35(17): e114. PUBMED online Impact Factor: 8.0
9. Legen J, Wanner G, Herrmann RG, Small ID, Schmitz-Linneweber C (2007) Plastid tRNA Genes trnC-GCA and trnN-GUU are essential for plant cell development The Plant Journal 51(5): 751-62. PUBMED online Impact Factor: 7.0
8. Maliga P, Small ID (2007) Plant biotechnology 2007: all three genomes make contributions to progress Current Opinion in Biotechnology 18, 97-99. online Impact Factor: 7.0
7. Pusnik M, Small ID, Read LK, Fabbro T, Schneider A (2007) Pentatricopeptide repeat proteins in T. brucei function in mitochondrial ribosomes Molecular and Cellular Biology 27(19): 6876-88. PUBMED online Impact Factor: 7.0
6. Small ID (2007) RNAi for revealing and engineering plant gene functions Current Opinion in Biotechnology 18(2): 148-153. PUBMED online Impact Factor: 7.0
5. Heazlewood JL, Verboom RE, Tonti-Filippini J, Small ID, Millar AH (2007) SUBA: The Arabidopsis Subcellular Database Nucleic Acids Research 35, D213-8. PUBMED online Impact Factor: 8.0
4. Andrés C, Lurin C, Small ID (2007) The multifarious roles of PPR proteins in plant mitochondrial gene expression Physiologia Plantarum 129, 14-22. online Impact Factor: 2.0
3. Millar AH, Whelan J, Small ID (2006) Recent surprises in protein targeting to mitochondria and plastids Current Opinion in Plant Biology 9(6): 610-615. PUBMED online Impact Factor: 11.0
2. Duchene AM, Giritch A, Hoffmann B, Cognat V, Lancelin D, Peeters NM, Zaepfel M, Marechal-Drouard L, Small ID (2005) Dual targeting is the rule for organellar aminoacyl-tRNA synthetases in Arabidopsis thaliana Proceedings of the National Academy of Sciences USA 102(45):16484-16489. PUBMED online Impact Factor: 10.0
1. Aubourg S, Brunaud V, Bruyère C, Cock M, Cooke R, Cottet A, Couloux A, Dehais P, Deléage G, Duclert A, Echeverria M, Eschbach A, Falconet D, Filippi G, Gaspin C, Geourjon C, Grienenberger JM, Houlné G, Jamet E, Lechauve F, Leleu O, Leroy P, Mache R, Meyer C, Nedjari H, Negrutiu I, Orsini V, Peyretaillade E, Pommier C, Raes J, Risler JL, Rivière S, Rombauts S, Rouzé P, Schneider M, Schwob P, Small ID, Soumayet-Kampetenga G, Stankovski D, Toffano C, Tognolli M, Caboche M, Lecharny A (2005) GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts Nucleic Acids Research 33, D641-6. PUBMED online Impact Factor: 8.0

Previous Publications by Ian Small

1. Mireau, H., Cosset, A., Marechal-Drouard, L., Fox, T.D., Small, I.D. and Dietrich, A. (2000) Expression of Arabidopsis thaliana mitochondrial alanyl-tRNA synthetase is not sufficient to trigger mitochondrial import of tRNAAla in yeast. J Biol Chem, 275, 13291-13296. (PubMed)

2. Peeters, N.M., Chapron, A., Giritch, A., Grandjean, O., Lancelin, D., Lhomme, T., Vivrel, A. and Small, I. (2000) Duplication and quadruplication of Arabidopsis thaliana cysteinyl- and asparaginyl-tRNA synthetase genes of organellar origin. J Mol Evol, 50, 413-423. (PubMed)

3. Small, I.D. and Peeters, N. (2000) The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci, 25, 46-47. (PubMed)

4. Yukawa, Y., Sugita, M., Choisne, N., Small, I. and Sugiura, M. (2000) The TATA motif, the CAA motif and the poly(T) transcription termination motif are all important for transcription re-initiation on plant tRNA genes. Plant J, 22, 439-447. (PubMed)

5. Small, I. and Kron, K.A. (2001) Placing heathers on the "Tree of Life". Yb. Heather Soc., 2001, 15-21.

6. Peeters, N. and Small, I. (2001) Dual targeting to mitochondria and chloroplasts. Biochim Biophys Acta, 1541, 54-63. (PubMed)

7. Duchene, A.M., Peeters, N., Dietrich, A., Cosset, A., Small, I.D. and Wintz, H. (2001) Overlapping destinations for two dual-targeted glycyl-tRNA synthetases in Arabidopsis thaliana and Phaseolus vulgaris. J Biol Chem, 276:15275-15283. (PubMed)

8. Fey, J., Weil, J.H., Tomita, K., Cosset, A., Dietrich, A., Small, I. and Marechal-Drouard, L. (2001) Editing of plant mitochondrial transfer RNAs. Acta Biochim Pol, 48, 383-389. (PubMed)

9. Fey, J., Weil, J.H., Tomita, K., Cosset, A., Dietrich, A., Small, I. and Marechal-Drouard, L. (2002) Role of editing in plant mitochondrial transfer RNAs. Gene, 286, 21-24. (PubMed)

10. Mollier, P., Hoffmann, B., Debast, C. and Small, I. (2002) The gene encoding Arabidopsis thaliana mitochondrial ribosomal protein S13 is a recent duplication of the gene encoding plastid S13. Curr Genet, 40, 405-409. (PubMed)

11. Hilson, P., Small, I. and Kuiper, M.T. (2003) European consortia building integrated resources for Arabidopsis functional genomics. Curr Opin Plant Biol, 6, 426-429. (PubMed)

12. Ambard-Bretteville, F., Small, I., Grandjean, O. and Colas des Francs-Small, C. (2003) Discrete mutations in the presequence of potato formate dehydrogenase inhibit the in vivo targeting of GFP fusions into mitochondria. Biochem. Biophys. Res. Commun., 311, 966-971. (PubMed)

13. Desloire, S., Gherbi, H., Laloui, W., Marhadour, S., Clouet, V., Cattolico, L., Falentin, C., Giancola, S., Renard, M., Budar, F., Small, I., Caboche, M., Delourme, R. and Bendahmane, A. (2003) Identification of the fertility restoration locus, Rfo, in radish, as a member of the pentatricopeptide-repeat protein family. EMBO Rep, 4, 588-594 (PubMed)

14. Small I, Peeters N, Legeai F, Lurin C. (2004) Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences. Proteomics. 4:1581-90. (PubMed)

15. Claire Lurin, Charles Andres, Sebastien Aubourg, Mohammed Bellaoui, Frederique Bitton, Clemence Bruyere, Michel Caboche, Cedrig Debast, Jose Gualberto, Beate Hoffmann, Alain Lecharny, Monique Le Ret, Marie-Laure Martin-Magniette, Hakim Mireau, Nemo Peeters, Jean-Pierre Renou, Boris Szurek, Ludivine Taconnat, and Ian D. Small (2004) Genome-Wide Analysis of Arabidopsis Pentatricopeptide Repeat Proteins Reveals Their Essential Role in Organelle Biogenesis. Plant Cell 16: 2089-2103. (PubMed)

16. Duchene AM, Giritch A, Hoffmann B, Cognat V, Lancelin D, Peeters NM, Zaepfel M, Marechal-Drouard L, Small ID (2005) Dual targeting is the rule for organellar aminoacyl-tRNA synthetases in Arabidopsis thaliana. Proc Natl Acad Sci U S A. 102:16484-16489. (PubMed)

17. Aubourg S, Brunaud V, Bruyere C, Cock M, Cooke R, Cottet A, Couloux A, Dehais P, Deleage G, Duclert A, Echeverria M, Eschbach A, Falconet D, Filippi G, Gaspin C, Geourjon C, Grienenberger JM, Houlne G, Jamet E, Lechauve F, Leleu O, Leroy P, Mache R, Meyer C, Nedjari H, Negrutiu I, Orsini V, Peyretaillade E, Pommier C, Raes J, Risler JL, Riviere S, Rombauts S, Rouze P, Schneider M, Schwob P, Small I, Soumayet-Kampetenga G, Stankovski D, Toffano C, Tognolli M, Caboche M, Lecharny A. (2005) GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts. Nucleic Acids Res. 33 (Database issue): D641-6. (PubMed)

18. Andres C, Lurin C, Small ID (2006) The multifarious roles of PPR proteins in plant mitochondrial gene expression. Physiologia Plantarum (in press) Impact Factor: 2.1

19. Millar AH, Whelan J, Small I (2006) Recent surprises in protein targeting to mitochondria and plastids. Current Opinion in Plant Biology 9:610-5 (PubMed) Impact Factor: 10.8


Centre Publications

Chief Investigators

Personal Publications

  • Ian Small
  • Murray Badger
  • David Day
  • Harvey Millar
  • Barry Pogson
  • Steve Smith
  • Jim Whelan

    • More...


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    main page last modified: Mon Jun 16 15:46:59 2008